Run R code

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Choose this drop-down menu to run an analysis using R. This will only work if you have down-loaded and installed R and the required libraries onto your computer.

Setting up R for use with CAP


Run r code dropdown


Check R Install - Choose to check you have R installed

Reset R.exe Path - Choose to tell CAP where on your computer the R executable is placed

PCA - Correlation

PCA - Covariance


Reciprocal Averaging

MDS - Bray Curtis

MDS - Jaccard




PCA - Cor -Outlier - This will calculate Mahalanobis distances

PCA - Covar - Outlier- This will calculate Mahalanobis distances